OVarFlow
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OVarFlow usage

  • Capabilities of OVarFlow
  • Quick reference for OVarFlow
  • A Primer into the technologies
  • Setup & preparations
  • Conda & Snakemake usage
  • Configuration & adaptation
  • Advanced usage topics
  • Docker & Singularity usage
  • The BQSR workflow

Example & Tutorial

  • Example & Tutorial

Resource optimizations

  • Resource requirements
  • Benchmarking & Optimizations
  • Hardware recommendations

The general workflow

  • The basic variant calling workflow
  • The extended BQSR workflow

OVarFlow 2

  • OVarFlow 2

GATK pitfalls

  • GATK Pitfalls

About OVarFlow

  • Citation
  • License
  • Contact
  • Repository
  • Change Log
OVarFlow
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© Copyright 2020, Jochen Bathke. Revision 5a57508e.

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