Citation

If you’re using OVarFlow or if the documentation provided here was helpful in your own work, please consider citing OVarFlow. The final peer-reviewed publication is:

Bathke, J., Lühken, G. OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow. BMC Bioinformatics 22, 402 (2021). https://doi.org/10.1186/s12859-021-04317-y.

A preprint was made available at the BioRxiv:

Jochen Bathke, Gesine Lühken. OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow. 2021. https://doi.org/10.1101/2021.05.12.443585.

License

  • The source code of OVarFlow itself is licensed under the terms of the GPLv3.

  • The accompanying documentation of OVarFlow (the document you’re reading right now) is licensed under the terms of the Creative Commons license CC-BY SA 3.0, either in your national translation or if not applicable in the global version.

Contact

OVarFlow has been developed at the Professorship of Pet and Pathogenetics at the Justus-Liebig-University Giessen. In case of comments or questions about OVarFlow, contact the institute. Due to high amounts of spam e-mail addresses cannot be posted publicly.

Repository

The source code of OVarFlow and its accompanying documentation can be found at:

Prebuild containers with all nessessary software components can be found at: