Citation
If you’re using OVarFlow or if the documentation provided here was helpful in your own work, please consider citing OVarFlow. The final peer-reviewed publication is:
Bathke, J., Lühken, G. OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow. BMC Bioinformatics 22, 402 (2021). https://doi.org/10.1186/s12859-021-04317-y.
A preprint was made available at the BioRxiv:
Jochen Bathke, Gesine Lühken. OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow. 2021. https://doi.org/10.1101/2021.05.12.443585.
License
The source code of OVarFlow itself is licensed under the terms of the GPLv3.
The accompanying documentation of OVarFlow (the document you’re reading right now) is licensed under the terms of the Creative Commons license CC-BY SA 3.0, either in your national translation or if not applicable in the global version.
Contact
OVarFlow has been developed at the Professorship of Pet and Pathogenetics at the Justus-Liebig-University Giessen. In case of comments or questions about OVarFlow, contact the institute. Due to high amounts of spam e-mail addresses cannot be posted publicly.
Repository
The source code of OVarFlow and its accompanying documentation can be found at:
Prebuild containers with all nessessary software components can be found at:
Docker hub (Docker images)
Zenodo.org, doi: 10.5281/zenodo.4746639 (Singularity containers)